Agentic RAG MCP Server
A local Retrieval-Augmented Generation system that enables AI agents to query and retrieve information from document collections using ChromaDB vector search and Ollama LLMs through a FastAPI interface.
README
MCP-Powered Agentic RAG System
A local, modular Retrieval-Augmented Generation (RAG) system using the Model Context Protocol (MCP) to connect an LLM to external tools like vector databases and document loaders.
<img src="/images/mcp-agentic-rag.gif" alt="description" style="width:100%; height:auto;" />
Overview
This project implements an agentic RAG system that:
- Retrieves relevant documents from a local vector database (ChromaDB)
- Augments prompts with retrieved context
- Generates informed responses using a local LLM (Ollama)
- Exposes functionality via REST API with FastAPI
Tech Stack
| Component | Tool/Library | Details |
|---|---|---|
| Language Model | Ollama | Local LLM inference (mistral, llama3, etc.) |
| Agent Framework | mcp + FastAPI | API server with tool registration |
| RAG Pipeline | LangChain + Custom | Context retrieval and prompt engineering |
| Vector Store | ChromaDB | Local, persistent vector database |
| Embeddings | SentenceTransformers | all-MiniLM-L6-v2 model |
| File Handling | pypdf, python-docx | PDF and document loading |
| Frontend (Optional) | Streamlit | Interactive web UI |
| Environment | Python 3.10+ | virtualenv or Conda |
Project Structure
agentic-rag-mcp/
├── main.py # FastAPI MCP server
├── rag_agent.py # Agent query logic and RAG orchestration
├── mcp_config.yaml # Configuration file
├── requirements.txt # Python dependencies
├── vector_store/ # Persisted ChromaDB vector store
├── data/
│ └── sample_docs/ # Sample documents for ingestion
└── tools/
└── chromadb_tool.py # Vector search tool implementation
Installation & Setup
1. Clone and Create Virtual Environment
cd agentic-rag-mcp
python -m venv .venv
# On Windows
.venv\Scripts\activate
# On macOS/Linux
source .venv/bin/activate
2. Install Dependencies
pip install -U pip
pip install -r requirements.txt
3. Set Up Ollama
Download and install Ollama from the official website.
Start the Ollama server:
# On the system terminal (not in virtual environment)
ollama serve
In another terminal, pull a model:
ollama pull mistral # Recommended for RAG
# or
ollama pull llama3
Verify the server is running:
curl http://localhost:11434/api/tags
Running the System
Option 1: Chat Interface (Interactive)
Run the interactive chat loop:
python rag_agent.py
This will:
- Load sample documents into the vector store
- Start an interactive chat where you can ask questions
- The agent will retrieve relevant documents and generate answers
Example interaction:
You: What is MCP?
Agent: The Model Context Protocol (MCP) enables modular tool use for AI agents by providing a standardized way to connect language models to external services...
[Used 2 retrieved documents as context]
Option 2: API Server
Start the FastAPI MCP server:
python main.py
The server will be available at: http://localhost:8000
API Endpoints
Health Check
GET /health
Query Agent
POST /query
Content-Type: application/json
{
"query": "What is artificial intelligence?",
"use_context": true,
"n_results": 3
}
Search Documents
POST /search
Content-Type: application/json
{
"query": "MCP protocol",
"n_results": 5
}
Add Documents
POST /documents
Content-Type: application/json
{
"documents": [
"Document text 1",
"Document text 2"
],
"ids": ["doc1", "doc2"],
"metadata": [
{"source": "file1.txt"},
{"source": "file2.txt"}
]
}
Get Statistics
GET /stats
Python Usage Examples
from rag_agent import RAGAgent
# Initialize agent
agent = RAGAgent(
ollama_url="http://localhost:11434",
model="mistral"
)
# Get a response
result = agent.get_response("What is RAG?")
print(result["response"])
print(f"Retrieved {len(result['retrieved_documents'])} documents")
Configuration
Edit mcp_config.yaml to customize:
- LLM Settings: Model, temperature, max tokens
- Vector Store: Embedding model, collection name
- RAG: Number of retrieved documents, similarity metric
- Server: Host, port, log level
- Security: API rate limits, authentication
Adding Custom Documents
Programmatically
from tools.chromadb_tool import ChromaTool
tool = ChromaTool()
documents = [
"Your document text 1",
"Your document text 2"
]
tool.add_documents(documents, ids=["id1", "id2"])
Via API
curl -X POST http://localhost:8000/documents \
-H "Content-Type: application/json" \
-d '{
"documents": ["Document 1", "Document 2"],
"ids": ["doc1", "doc2"]
}'
Optional Streamlit Frontend
Create streamlit_app.py:
import streamlit as st
import requests
st.set_page_config(page_title="RAG Agent", layout="wide")
st.title("MCP-Powered Agentic RAG")
query = st.text_input("Ask a question:")
if query:
response = requests.post(
"http://localhost:8000/query",
json={"query": query}
)
result = response.json()
st.subheader("Response")
st.write(result["response"])
st.subheader("Retrieved Context")
for i, doc in enumerate(result["retrieved_documents"], 1):
st.write(f"**Doc {i}**: {doc[:200]}...")
Run Streamlit:
streamlit run streamlit_app.py
Extensions & Future Work
- ✅ Basic RAG with ChromaDB
- ⬜ Web search tool integration
- ⬜ PDF document ingestion UI
- ⬜ Agent memory (conversation history)
- ⬜ Multi-modal support (images, tables)
- ⬜ Fine-tuning on domain-specific data
- ⬜ Structured output (JSON schemas)
- ⬜ Real-time streaming responses
Troubleshooting
"Connection refused" for Ollama
- Make sure Ollama server is running:
ollama serve - Check it's accessible:
curl http://localhost:11434/api/tags
ChromaDB embedding errors
- Ensure sentence-transformers is installed:
pip install sentence-transformers - First run downloads embeddings model (~30MB)
Vector store not persisting
- Check
./vector_store/directory exists and is writable - Verify
persist_dirin configuration matches actual path
License
MIT License - See LICENSE file for details
Contributing
Contributions are welcome! Please:
- Fork the repository
- Create a feature branch
- Commit changes
- Push and open a pull request
References
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