ATLAS MCP

ATLAS MCP

Safe, reliable, and verifiable execution for the Model Context Protocol, enabling governed tasks with planning, capability approval, side-effect verification, and evidence receipts.

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README

<div align="center">

<img src="docs/assets/melra-logo.png" alt="MELRA logo" width="150" />

MELRA

Modular Execution Layer for Reliable Autonomy

Safe execution · Durable memory · Verified outcomes

An open-source execution system for durable, policy-governed autonomous workflows across files, terminal, browser, memory, and computer use—with MCP, CLI, and SDK interfaces plus inspectable, hash-linked evidence records.

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<!-- Build & quality --> <a href="https://github.com/XAGI-Lab/melra/actions/workflows/ci.yml"><img src="https://github.com/XAGI-Lab/melra/actions/workflows/ci.yml/badge.svg" alt="CI status" /></a> <a href="https://github.com/XAGI-Lab/melra/actions/workflows/codeql.yml"><img src="https://github.com/XAGI-Lab/melra/actions/workflows/codeql.yml/badge.svg" alt="CodeQL status" /></a> <a href="https://github.com/XAGI-Lab/melra/actions/workflows/audit.yml"><img src="https://github.com/XAGI-Lab/melra/actions/workflows/audit.yml/badge.svg" alt="Dependency audit status" /></a> <a href="https://github.com/XAGI-Lab/melra/actions/workflows/container.yml"><img src="https://github.com/XAGI-Lab/melra/actions/workflows/container.yml/badge.svg" alt="Container build status" /></a>

<!-- Evidence --> <img src="https://img.shields.io/badge/evals-30_scenarios_passing-22c55e?style=flat-square&logo=checkmarx&logoColor=white" alt="30 deterministic evaluation scenarios passing" /> <img src="https://img.shields.io/badge/tests-166_passing-22c55e?style=flat-square&logo=vitest&logoColor=white" alt="166 JavaScript tests passing" /> <img src="https://img.shields.io/badge/MCP_E2E-12_passing-22c55e?style=flat-square&logo=testcafe&logoColor=white" alt="12 real MCP end-to-end cases passing" /> <img src="https://img.shields.io/badge/runtime_vulnerabilities-0_known-22c55e?style=flat-square&logo=snyk&logoColor=white" alt="No known production runtime vulnerabilities" />

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<!-- Stack --> <img src="https://img.shields.io/badge/TypeScript-strict-3178C6?style=flat-square&logo=typescript&logoColor=white" alt="TypeScript strict" /> <img src="https://img.shields.io/badge/Node.js-22_%7C_24-5FA04E?style=flat-square&logo=nodedotjs&logoColor=white" alt="Node.js 22 and 24" /> <img src="https://img.shields.io/badge/Python-3.11%2B-3776AB?style=flat-square&logo=python&logoColor=white" alt="Python 3.11 or newer" /> <img src="https://img.shields.io/badge/pnpm-9.5-F69220?style=flat-square&logo=pnpm&logoColor=white" alt="pnpm 9.5" /> <img src="https://img.shields.io/badge/SQLite-local_state-003B57?style=flat-square&logo=sqlite&logoColor=white" alt="SQLite local state" /> <img src="https://img.shields.io/badge/Playwright-browser-2EAD33?style=flat-square&logo=playwright&logoColor=white" alt="Playwright browser runtime" /> <img src="https://img.shields.io/badge/Docker-hardened-2496ED?style=flat-square&logo=docker&logoColor=white" alt="Hardened Docker image" />

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<!-- Platform & project --> <img src="https://img.shields.io/badge/macOS-supported-000000?style=flat-square&logo=apple&logoColor=white" alt="macOS supported" /> <img src="https://img.shields.io/badge/Linux-supported-FCC624?style=flat-square&logo=linux&logoColor=black" alt="Linux supported" /> <img src="https://img.shields.io/badge/Windows-supported-0078D4?style=flat-square&logo=windows&logoColor=white" alt="Windows supported" /> <img src="https://img.shields.io/badge/transport-stdio-475569?style=flat-square" alt="Local stdio transport" /> <img src="https://img.shields.io/badge/telemetry-off-0f172a?style=flat-square" alt="Telemetry off" />

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<a href="https://github.com/XAGI-Lab/melra/releases"><img src="https://img.shields.io/github/v/release/XAGI-Lab/melra?include_prereleases&style=flat-square&color=8b5cf6&logo=github" alt="Latest release" /></a> <a href="LICENSE"><img src="https://img.shields.io/badge/license-Apache--2.0-f97316?style=flat-square" alt="Apache-2.0 license" /></a> <a href="CONTRIBUTING.md"><img src="https://img.shields.io/badge/DCO-required-6366f1?style=flat-square&logo=git&logoColor=white" alt="DCO sign-off required" /></a> <a href="https://github.com/XAGI-Lab/melra/discussions"><img src="https://img.shields.io/badge/discussions-join-2563eb?style=flat-square&logo=github" alt="GitHub Discussions" /></a> <a href="CONTRIBUTING.md"><img src="https://img.shields.io/badge/PRs-welcome-ec4899?style=flat-square" alt="Pull requests welcome" /></a>

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<img src="docs/assets/melra-hero.png" alt="MELRA governed execution flow" width="100%" />

</div>

<br />

[!WARNING] MELRA is an alpha release. Its local stdio runtime is tested end to end, but APIs may change before 1.0. Use an isolated workspace, keep domain and command allowlists narrow, and review every consequential approval.

Durable Core Alpha — 0.3.0-alpha.0

Shipped in this source release Evidence
Restart-safe bounded workflows across seven node kinds Real MCP process is stopped, replaced, and resumed in E2E
Encrypted exact task, workflow, and result payloads AES-256-GCM storage plus plaintext-leak checks across SQLite/WAL and public projections
Ten MCP tools for tasks and workflows Container and stdio discovery checks require the exact tool set
Recovery without silent mutation replay 8/8 deterministic recovery scenarios, zero duplicates, zero false success

Contents

Why MELRA Execution layers Where to use it
Quickstart MCP tool surface How execution works
Evidence Safe defaults Reproduce the scores
SDKs Repository map Documentation

Why MELRA

Most MCP servers hand a model a tool and hope for the best. A command runs, a click lands, a file is written — and "it returned without an error" is treated as success.

MELRA separates the action succeeded from the goal was achieved.

<table> <tr> <th width="50%">🚫 Typical tool server</th> <th width="50%">✅ MELRA</th> </tr> <tr> <td>

  • Tool call executes immediately
  • Success = no exception thrown
  • Policy, if any, checked once
  • Mutations are indistinguishable from reads
  • Output is trusted
  • No durable record

</td> <td>

  • Plan and execute are separate tool calls
  • Success = declared evidence predicates passed
  • Policy re-evaluated at execution time
  • Mutations need evidence and an exact approval phrase
  • Page content is explicitly marked untrusted
  • Redacted receipt + SHA-256 execution certificate

</td> </tr> </table>

If a mutation succeeds but its required evidence is missing or false, the task is partialnever verified_success.


One runtime, five execution layers 🧭

MELRA turns a tool call into a durable, inspectable task:

Layer What is implemented
🗂️ Files Root-confined read, hash, atomic write, move, mkdir, and delete with symlink-escape defenses
💻 Terminal Shell-free foreground and supervised background processes with allowlists, timeouts, cancellation, and redaction
🌐 Browser Isolated Playwright sessions, semantic DOM targets, bounded artifacts, network policy, and condition-based post-action settling
🧠 Memory Scoped SQLite memory with hybrid lexical ranking, episode context, speaker matching, confidence, freshness, diversity, expiry, supersession, provenance, and redaction
🖥️ Computer Capability discovery plus governed screenshot, pointer, keyboard, and scroll adapters on macOS and supported Linux/X11 setups

Every layer passes through the same policy, approval, budget, verification, receipt, and certificate pipeline.


Where you can use MELRA 🛠️

MELRA works with any MCP client that can launch a local stdio server.

<div align="center">

Client Setup Status
Claude Desktop docs <img src="https://img.shields.io/badge/documented-2563eb?style=flat-square" alt="documented" />
Cursor docs <img src="https://img.shields.io/badge/documented-2563eb?style=flat-square" alt="documented" />
VS Code docs <img src="https://img.shields.io/badge/documented-2563eb?style=flat-square" alt="documented" />
Any stdio MCP client docs <img src="https://img.shields.io/badge/documented-2563eb?style=flat-square" alt="documented" />

</div>

[!NOTE] A named client is marked verified only after the released artifact — not a source checkout — passes discovery, planning, approval, execution, cancellation, and receipt retrieval in that client. Current per-client status is tracked in COMPATIBILITY.md.

What people actually do with it

Use case Small example Verified outcome
👩‍💻 Coding clients Inspect a repository, run pnpm check, write a bounded file change Exit code, file existence, content, or hash
🌐 Browser workflows Open an allowlisted page, inspect it, fill a form after approval Final URL and page content
💻 Terminal automation Run a shell-free build or supervise a background process Exit code and bounded stdout
🖥️ Computer use Discover local support, capture a screenshot, approve pointer or keyboard input Adapter result plus declared evidence
🧠 Project memory Store a test command, architectural decision, or operating procedure Scoped record with provenance and redaction
🔁 Durable workflows Inspect, write an approved artifact, restart between nodes, then checkpoint Ordered events, independent file evidence, receipt, and certificate

<details> <summary><b>Show a governed terminal operation</b></summary>

<br />

A coding client submits one bounded operation with the evidence it expects:

{
  "goal": "Run the repository checks",
  "operation": {
    "kind": "terminal",
    "action": "run",
    "command": "pnpm",
    "args": ["check"]
  },
  "requiredEvidence": [
    { "type": "exit_code", "value": 0 }
  ]
}

The task reaches verified_success only if the process exits 0. A process that runs and exits 1 is a completed action with failed evidence — reported as partial.

</details>

<details> <summary><b>Show scoped project memory</b></summary>

<br />

pnpm melra run --request examples/07-project-decision-memory/task.json

Records are scoped, provenance-tagged, and pass through secret redaction before they are persisted.

</details>

See all runnable examples — browser inspection, verified file writes, terminal checks, scoped memory, and computer capability discovery.


Quickstart 🚀

Requirements: Node.js 22+, pnpm 9.5, and optionally Chrome, Chromium, or Edge for browser work.

git clone https://github.com/XAGI-Lab/melra.git
cd melra
corepack enable
pnpm install --frozen-lockfile
pnpm build
node apps/cli/dist/index.js doctor
pnpm melra init --client generic
node apps/cli/dist/index.js workflow plan \
  --definition examples/workflows/restart-safe.json

<table> <tr><th>Goal</th><th>Command</th></tr> <tr><td>Start the stdio server</td><td><code>pnpm melra serve</code></td></tr> <tr><td>Run a read-only system task</td><td><code>pnpm melra run --request examples/01-system-info/task.json</code></td></tr> <tr><td>Run a verified mutation</td><td><code>pnpm melra run --request examples/02-verified-file-write/task.json</code></td></tr> <tr><td>Inspect a stored receipt</td><td><code>pnpm melra inspect <task-id></code></td></tr> <tr><td>Advance a durable workflow</td><td><code>pnpm melra workflow advance <workflow-id></code></td></tr> <tr><td>Test a policy file</td><td><code>pnpm melra policy test</code></td></tr> </table>

Mutations pause for an exact, expiring, task-scoped approval phrase. See installation and client setup for Claude Desktop, Cursor, VS Code, generic clients, Python, and Docker.

MELRA creates <MELRA_HOME>/payload.key with private permissions on first start. Back it up together with the SQLite files: losing or changing the key makes persisted executable payloads unreadable. Never commit the key or place it directly in a shared client configuration.

[!CAUTION] The npm package melra and the PyPI package melra are unrelated third-party projects. Install only from this repository or from official XAGI-Lab releases.


Restart-safe first workflow 🔁

The committed example performs a read, pauses for an approved file write, and finishes at a durable checkpoint. Each CLI invocation is a new process, so this sequence exercises restart persistence without keeping a daemon alive:

node apps/cli/dist/index.js workflow plan \
  --definition examples/workflows/restart-safe.json
# save the returned workflow id

node apps/cli/dist/index.js workflow advance <workflow-id>
node apps/cli/dist/index.js workflow advance <workflow-id>
# the second command exits 3 and returns the write approval challenge

node apps/cli/dist/index.js workflow advance <workflow-id> \
  --approval '<approval-id>:<exact phrase>'
node apps/cli/dist/index.js workflow advance <workflow-id>

Shortened output captured from the 0.3.0-alpha.0 release candidate:

planned            stateVersion=2
running            stateVersion=4   inspect=verified_complete
awaiting_approval  stateVersion=7   phrase="APPROVE <digest prefix>"
running            stateVersion=10  write=verified_complete
verified_complete  stateVersion=14  checkpoint=verified_complete

The final file is read independently in the real-process E2E test. Closing the process after any displayed boundary and running the next command against the same MELRA_HOME resumes the persisted workflow.


A deliberately small MCP surface ✨

Ten tools in front of five capability runtimes and one durable workflow controller:

MCP tool Purpose
melra_capabilities Discover operations, platform support, limits, and policy posture
melra_plan Validate, persist, and policy-check one bounded operation
melra_execute Execute an approved plan and verify the declared outcome
melra_task_status Read durable task state
melra_task_cancel Cooperatively cancel pending or running work
melra_receipt Retrieve redacted evidence and the execution certificate
melra_workflow_plan Validate, preflight, encrypt, and persist a bounded workflow
melra_workflow_advance Execute one ready scheduling wave
melra_workflow_status Read the durable workflow projection
melra_workflow_cancel Cooperatively cancel nonterminal workflow work

Workflow definitions compose operation, approval, condition, parallel, bounded-loop, checkpoint, and compensation nodes while every effect still travels through the task policy and evidence pipeline.


How execution works ⚙️

flowchart LR
    Client["MCP · CLI · SDK"] --> Plan["Persist task or workflow"]
    Plan --> Policy{"Policy at plan time"}
    Policy -->|deny| Stop["Policy blocked"]
    Policy -->|allow or exact approval| Recheck{"Policy at execution time"}
    Recheck --> Runtime["File · terminal · browser · memory · computer"]
    Runtime --> Observe["Post-action observation"]
    Observe --> Verify{"Evidence predicates pass?"}
    Verify -->|yes| Success["Verified success"]
    Verify -->|no| Partial["Partial or failed"]
    Success --> Event["Ordered event + projection"]
    Event --> Receipt["Redacted receipt + SHA-256 certificate"]
    Partial --> Receipt

Task lifecycle:

planned → awaiting_approval → running → verifying
                                     ↘ verified_success
                                     ↘ partial | failed | cancelled | budget_exhausted

Policy is evaluated twice — once when the plan is persisted and again at execution — so a stale plan can never ride a since-tightened policy.

[!IMPORTANT] Current alpha boundary: exact task and workflow payloads survive restart in AES-256-GCM envelopes. Interrupted reads may retry; interrupted mutations are never silently repeated and require independent filesystem reconciliation or enter recovery_required. Evidence predicates remain caller-authored: filesystem predicates independently re-read state, while result, terminal, URL, and page predicates evaluate adapter observations.


Evidence, not leaderboard theatre 📊

The numbers below come from committed scripts and JSON artifacts measured on an Apple Silicon Mac. They are component measurements, not a claim that MELRA MCP is universally "the best" or that unlike benchmarks are comparable.

Capability Current public result What it means
🧠 LoCoMo retrieval 0.7597 mean evidence coverage@20 1,982 evidence-bearing questions; +20.75% relative over the previous public ranker; zero model, embedding, or network calls
🧠 Synthetic recall 100/100 Recall@1 Deterministic planted-fact regression over 1,000 records
🌐 Static-page settle 183.7 ms p50 vs 301.3 ms 39% less waiting with identical 10/10 correct reads
🌐 Slow-render settle 10/10 vs 0/10 correct Condition-based waiting observes the final DOM; fixed 300 ms reads too early
💻 Terminal 30/30 verified executions Shell-free process launch; 48.1 ms p50 on the measured machine
🖥️ Computer control plane 30/30 capability probes 0.032 ms p50 adapter discovery; this is not a desktop task-success score
Safety/execution evals 22/22 passing Deterministic policy, traversal, terminal, memory, computer, cancellation, and verification scenarios
🔁 Durable Core eval 8/8 valid scenarios 100% expected recovery, 0 duplicate execution, 0 false success, 100% event consistency

Read the research index, the benchmark methodology, and the raw microbenchmark and LoCoMo artifacts.

Browser-agent evaluation — harness registered, score not yet claimed

The repository contains a pre-registered browser-agent evaluation harness:

Track Status
MiniWoB-125 development suite (browsergym-miniwob==0.14.3) <img src="https://img.shields.io/badge/harness-ready-2563eb?style=flat-square" alt="harness ready" />
WebArena-Verified Hard-30 registered subset (webarena-verified==1.2.3) <img src="https://img.shields.io/badge/harness-ready-2563eb?style=flat-square" alt="harness ready" />
Published representative score <img src="https://img.shields.io/badge/not_yet_run-64748b?style=flat-square" alt="not yet run" />

Task IDs, upstream revisions, and dataset hashes are frozen in benchmarks/browser-agent/manifests/ and enforced by pnpm benchmark:browser:verify-upstream. A score will be published only after a full fixed-denominator run completes without infrastructure-invalid pairs and its sanitized artifact passes the publication gate.

[!IMPORTANT] MELRA has not run an official OSWorld, OSWorld-MCP, WebArena, or LongMemEval end-to-end submission. Those scores remain unclaimed until the exact public harness, environment, model policy, and evaluator are released with the result.


Safe defaults 🔒

Default
🏠 Local-only stdio transport; no account or hosted service required
📴 Telemetry is off
🚫 Shell interpreters, privilege escalation, and arbitrary desktop key names are denied
📁 Paths and terminal working directories stay inside the configured root
🌐 Browser domains start deny-by-default; private, link-local, loopback, and cloud-metadata destinations stay blocked unless explicitly permitted
⚠️ Browser output is marked untrusted; page content never changes policy
✍️ Mutations require both declared evidence and an exact task-scoped approval
🔑 Secret patterns are redacted before terminal output, memory, tasks, or receipts are persisted
🎛️ Computer actions use bounded typed fields and platform adapters — not a user-supplied shell command

See the threat model and security policy for residual risks.


Reproduce the scores 🧪

# full validation gate
pnpm check
pnpm evals
pnpm e2e
pnpm pack:check
pnpm security:audit
pnpm --filter @melra/evals evaluate:durable-core -- --publishable

# local memory, browser, terminal, and computer microbenchmarks
pnpm benchmark:core

# hardened local container and real MCP smoke
docker build -t melra:local .
docker run --rm melra:local doctor
pnpm docker:smoke

<details> <summary><b>LoCoMo memory retrieval</b> — dataset intentionally not vendored (CC BY-NC 4.0)</summary>

<br />

git clone https://github.com/snap-research/locomo.git /tmp/locomo
pnpm benchmark:locomo -- \
  --dataset /tmp/locomo/data/locomo10.json \
  --output docs/research/results/locomo-retrieval.json

</details>

<details> <summary><b>Browser-agent harness</b> — contract checks and the MiniWoB development suite</summary>

<br />

Contract and registered-selection checks run with no model and no network environment:

pnpm benchmark:browser:check
pnpm benchmark:browser:verify-upstream

The MiniWoB development suite additionally needs the pinned MiniWoB++ assets, a built CLI (pnpm build), and an agent configuration whose api_key_env names a variable present in the environment:

uv run --project benchmarks/browser-agent --extra miniwob \
  melra-browser-bench run-miniwob \
  --manifest benchmarks/browser-agent/manifests/miniwob-125-v1.json \
  --run-dir benchmarks/browser-agent/runs/miniwob-candidate \
  --workspace benchmarks/browser-agent/runs/workspaces \
  --base-url "$MINIWOB_BASE_URL" \
  --browser-executable "$MELRA_BROWSER" \
  --implementation-commit "$(git rev-parse HEAD)" \
  --agent-config benchmarks/browser-agent/runs/config/agent.json

Run outputs — HAR, screenshots, video, and transcripts — are Git-ignored and must never be committed.

</details>

Benchmark artifacts include dataset hashes, environment details, sample counts, latency percentiles, and explicit claim boundaries.


SDKs and implementation languages 🧩

SDK Package Language
TypeScript client @melra/sdk <img src="https://img.shields.io/badge/-3178C6?style=flat-square&logo=typescript&logoColor=white" alt="TypeScript" />
Python client melra <img src="https://img.shields.io/badge/-3776AB?style=flat-square&logo=python&logoColor=white" alt="Python" />
JSON contracts @melra/protocol · @melra/receipt-schema <img src="https://img.shields.io/badge/-000000?style=flat-square&logo=json&logoColor=white" alt="JSON" />

MELRA is capability-driven, not language-restricted. Rust, Go, Python, TypeScript, Swift, C#, or another language can be used when measurement shows a real improvement in isolation, portability, performance, reliability, or platform integration without fragmenting the public contracts.


Repository map 🗂️

apps/cli/                   CLI and stdio entrypoint
packages/protocol/          strict task, workflow, event, and operation schemas
packages/runtime-core/      task/workflow lifecycle, events, recovery
packages/policy-core/       local policy and scoped approvals
packages/server/            ten-tool MCP server and runtime router
packages/file-runtime/      confined filesystem operations
packages/terminal-runtime/  shell-free process supervision
packages/browser-runtime/   isolated browser automation and stable-DOM wait
packages/computer-runtime/  governed local computer-use adapters
packages/memory/            scoped hybrid retrieval and lifecycle controls
packages/storage-sqlite/    transactional tasks, workflows, events, evidence
packages/verifier-core/     deterministic evidence predicates
packages/receipt-schema/    receipts and execution certificates
packages/sdk-ts/            TypeScript client SDK
sdk-py/                     Python client SDK
benchmarks/browser-agent/   pre-registered browser-agent evaluation harness
evals/                      safety and durable crash-recovery evaluations
scripts/                    benchmark and release checks
docs/research/              methods, findings, and raw results
examples/                   runnable task examples

Documentation 📚

📦 Installation & client setup 🧭 Capabilities & limits 🏛️ Architecture
🔬 Research & benchmarks 🔗 Compatibility policy Validation evidence
🛡️ Threat model 🗺️ Roadmap 📝 Changelog

Contributing 🤝

Code, adapters, benchmark harnesses, verifier predicates, documentation, and threat analysis are all welcome.

  1. Read CONTRIBUTING.md and the Code of Conduct.
  2. Sign your commits under the DCO (git commit -s).
  3. Run pnpm check before opening a pull request.
  4. Report vulnerabilities through GitHub private vulnerability reporting — never in a public issue.

License 📄

Software and documentation are licensed under the Apache License 2.0. The official logo and hero artwork are licensed under CC BY-ND 4.0; see BRAND.md. Third-party benchmark datasets retain their own licenses and are not included in this repository.

<div align="center"> <br />

Built in the open by XAGI Labs.

<sub>MELRA brand assets © XAGI Labs Private Limited, licensed CC BY-ND 4.0.</sub>

</div>

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